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Yours works exactly right. That's how I want mine to look.
Your first page is just the same as mine, but if you were using my site, you would click on, say, your Security\Antivirus link, but instead of it nicely listing your 3 catergories from top to bottom on the left hand side of the page, and everything else on the page staying the same, mine reverts back to using the default XOOPS download module. i.e. it displays the sub catergories just the same. What makes it worse is that all the fonts double in size, and all these weird figures appear at the top of the screen.
Did you just install it and run it initially, and then you chose to make the changes you refer to, or did you also have the same problem? If you did, how did you correct it? In other words, which bits of the theme files did you change?
Thanks