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Tom,
This is probably not what you want to hear but the best and safest way is to make a backup of your existing site (including the database) and then perform the incremental updates one at a time.
I'd recommend after you perform each upgrade (for example 2.07 to 2.0.9.2 from the xoops-2.0.7.x_to_2.0.9.2.zip file) you update each of the modules you have installed that are affected by the upgrade (in this example it would be mydownloads, mylinks, newbb, system, xoopsheadline, xoopsmembers, and xoopspartners) in the Admin console. You do not have to "upgrade" any modules you were not using, ie. that weren't "installed".
The upgrades you'll have to install are:
- xoops-2.0.7.x_to_2.0.9.2
- xoops-2.0.9.2-to-2.0.10
- xoops-2.0.10-to-2.0.12a
- xoops-2.0.12a-to-2.0.13
- xoops-2.0.13-to-2.0.13.1
- xoops-2.0.13.1-to-2.0.13.2
of course you can download all of them from
here.