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Draven:
Whilst I agree that the MAJORITY of display issues can be resolved through editing the templates, I have to point out that much of the problem here results from the use of composite arrays or variables.
For example, the reason that "Comments?" still appears in articles when comments are disabled, is because the phrase is a composite component of <{$story.morelink}>, which means it cannot simply be removed by editing the template.
Another example within the news module is that the title and topic also become a composite array, so they must be displayed on the same line. This is often undesireable - I know for example that I prefer to see a topic heading ABOVE the headline of the story.
Designers choose to use a CMS because it saves time for both them and their client. Whilst redesigning the look and feel of the site is part of their job, they should not be subjected to programming (or re-programming) PHP where it could be avoided - if we were all PHP experts, we would write our own CMS after all.