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How can I do this w/out access to the admin page?
By using the direct link. /modules/system/admin.php?fct=modulesadmin&op=update&module=system
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Where is this configuration stored? Should I change this and how?
Let's first try to get your system running.
Are you sure all required directories and their subdirectories have write access?
With phpMyAdmin, empty the session table.
Did you check your database for occurences of the old domain name?
Can you do the file check (see release notes), to see if the upload is complete?
After that you should move the two directories xoops_data and xoops_lib with your file manager, so they come aside eg htdocs. The physical path for these two is also in the mainfile.php and must be set to the new path.
Alternative solution would be: backup the database; delete everything; upload XOOPS core and make a fresh install, check correct functioning, copy your modules, themes and upload directories; clear the database and restore the database from backup (clear session records and replace domain names).