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Thanks, that was the problem that I was having. What I realised is that you can in the user profiles actually set a server time zone for a user. That was where we were off on my site, the server time and site time were the correct times, but I was listed as being several tim zones different.
Perhaps this is an item for a help file or something to go in the docs folder of the extcal module. Its a great resource that the module does this, but its simply not clear how to fix if not working.