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LOL! ...amazing.
I have just spent a lot of time implementing Dokuwiki on a site... felt that it was working well.
Then...seeing your post, I turned on the Debug and...
whoosh...pretty much the same set of several dozen errors, just like you!
Regardless, it does work. v.2.02 tamed the search function and that is what I have running.
I evaluated both Wiwimod and Dokuwiki... I was biased towards using Doku, since I had already done some manuals on a Joomla site, using Dokuwiki, am got pretty comfortable with the syntax.
Until v.2.02 fixed the search, I was content in settling for Wiwimod and found more freedom with the formatting and direct HTML capabilities.
Both work satisfactorily, IMHO. I probably will go live with the Dokuwiki module.
I did find Wiwimod m-u-c-h faster... and that was a positive.
Maybe all the errors that we see now were the cause of the slowness in Doku.