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Hi Doug,
MySQL 4.0.18 is certainly ok to use, as I'm runing XOOPS with it without problems.
However, I had the same issue as yours a few days ago on a mandrake box, it was because I forgot to add MySQL extension to php. After I installed php-mysql, everythong went on fine. But if you already have php-mysql loaded, I can't see where the problem is...