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Hi WonderFish...
Could you mere specific, what u want to modify? Perhaps some mock layout image that you want, so i could give you better advice.
If you r talking about spolight, you could choose or add your own layout at block->edit.
sorry for almost no documentation... we keep delaying it due to other commitment, but we promise once we have time, we slowly write or capture video (faster :)) to show the functionality and how to modify AMS.
Now we little bit busy upgrading our XPRESS module (wordpress for XOOPS, enhanced from xoopsforge@phpp code) from 2.0.11 (latest 2.0.x branch) to 3.0.0 (latest wordpress). If anyone interested with this module, please hold yourself 1st, since it only for NovaSmart use and not targeted for public release due to hassle to make it compatible with multiple configuration (php,apache,xoops versions). If it stable enough, then we will release it in our website for public download with minimal support.
We will continue AMS 3.0 development once it done.