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While using both, DON'T check "Yes" in Protector's Preferences "Force intval to variables like id".
If you check yes, all pages of dokuwiki stop to working, except startpage.
I think it's 'cause dokuwiki addresses include "id". (...doku.php?id=lectures:opm...)
I use "userewrite" option of dokuwiki, but still have the problem with Protector's id checking.