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Hunter:
There's nothing wrong with your site, for the moment. The notices you see are normal for a new installation of XOOPS. Now you need to begin configuring your system.
I'd recommend you to log in and begin playing with the options available. Once you log in, you'll have a single button in the admin section, but that is a powerful button; the system module. Play with its options and you'll soon be doing sites like this...
As head of the documentation team, I'm preparing drafts for the tables of content for several documents we'll begin preparing both for newbies and for regular users. there's a lot happening for the moment behind the curtain, but quite soon the road ahead will be much clearer.
Cheers.