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Found the answer... should anyone else need it!
Tiny Content: Fixed Menu Sort
In order to get the main menu order to reflect the changes to the sort that you made on the admin screen (i.e. so that you can sort them in a different way than the order that you entered them), you just need to change 1 line.
In the /tinycontent/xoops_version.php file you need to change line 64 from:
$result = $xoopsDB->query("SELECT storyid, title, homepage, submenu FROM ".$xoopsDB->prefix("tinycontent")." WHERE homepage='0' AND submenu='1'");
to:
$result = $xoopsDB->query("SELECT storyid, title, blockid, homepage, submenu FROM ".$xoopsDB->prefix("tinycontent")." WHERE homepage='0' AND submenu='1' ORDER BY blockid");