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Hi chapi,
I owe you a big thank you! The adminmenu.php file is generated server side so that's why I couldn't find a way to change the sort order of the modules menu in admin.
Anyway, you put me on the right track and after some tweaking I was able to change the order to my preferences. I think this feature should be available in the admin section, because I believe a lot of xoopsers can benefit from it. Maybe for a next release?
Thanks for the tip, chapi!