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We have here the 2.3.2b installed, and I run again updates on the System and Protector, without any errors. So we'll need some Morphogenesis experts to help, because I don't know what to tell you.
Did you install it from the Update package, or from the whole package?
If from the Update, could you install it from the full package as you would install for 2.0.18, i.e. copy all the files except the mainfile.php and the directories such as install, cache, template_c, uploads. I would also copy the Themes subdirectory just to make sure that you have the right theme files.
