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Hi,
In most cases you will need to manually edit the theme.html file which came with the theme. It may be as simple as looking for the links in this file.
If the links do not seem to be in theme.html then look at the code and see if any other .html that came with the theme are called/included by it.
For example, a theme that I'm adapting for XOOPS 2.0.14+ (to include the bottom blocks) has this code:
<{include file="$xoops_rootpath/themes/$xoops_theme/header_menu.html"}>
In other words, theme.html is calling header_menu.html and it is header_menu.html that contains the buttons/links.
Hope this helps