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GDI, Firefox wasn't showing me the updated version of the page... so I missed this question: (My sincerest apologies to everyone)
"If you FTP to your site, do you see the System module in the modules directory?"
Yes, the System Module is in the Modules Directory. The format is as follows:
4096 Jun 17 19:21 .
4096 Feb 15 23:30 ..
4096 Jun 19 18:16 admin
6579 Jun 17 19:21 admin.php
4096 Jun 19 18:16 blocks
2538 Jun 17 19:21 constants.php
4096 Feb 15 23:30 images
33 Jan 2 2003 index.html
4096 Feb 15 23:30 language
3709 Jun 17 19:21 menu.php
3686 Mar 5 2003 style.css
4096 Jun 17 19:16 templates
9390 Jun 17 19:21 xoops_version.php
Does that help any?