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yes i've noticed this too in XOOPS 2.0.9, it's caused me quite a bit of work when editing x-ipbm core files, as i was unaware of the problem in this topic till a little earlier, and i kept checkin the files but couldn't see a problem in my editing.. finally realised there were double the amount of templates in the blocks section.. so i removed them and did an update of the modules and it solved my problem and i realise the edited files do actually work lol.
hopefully a proper fix will be out soon :)