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I am having a simular issue, but all my blocks disappear.
http://www.advenquest.com/index.phpI can still get to the control panel home via the url, but when I get in the blocks administration menu everything is gone - all default and custom blocks are gone for every group.
I just installed XOOPS 2.0.7 and started having the problem after working several hours to tranfer content from the old site to the news modudle in xoops. I deleted the files from the template_c like you, but it started again this morning. I am wandering if it's a 2.0.7 issue, because I have another site running 2.0.6 and have never seen this issue.
Apache version 1.3.31 (Unix)
MySQL version 4.0.20-standard
PHP version 4.3.8
PHP info Click to view
PERL version 5.8.4
Kernel version 2.4.20-021stab022.1.777-enterprise
Cpanel version 9.4.1-RELEASE-64
Browser Browser: IE version 6.0.2800