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I had a bunch of these errors as well on a site I am building. If you follow instructions from the post they will go away.
In the modules directory, I went through each directory assigned to modules. I deleted unused module directories and ensured that the file xoops_version.php is in the top level of the specific module directory ...
Reload the Module Administration and voilà ... They are gone ... In my case there were five to six entries like this "Module File for Not Found" for each incorrect module directory. This also removed empty module entries in the not yet installed modules list at the bottom of the Module Administration page ....