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In XOOPS v2.0.3 (and from what I have seen, also in the latest v2.0.5), there is an error in the style sheet. This causes numbered lists in the phpWiki XOOPS module to incorrectly display squares instead of numbers.
to fix this.. change your themes/default/style.css :
-----
h1 {}
h2 {}
h3 {}
h4 {}
h5 {}
ol { margin: 2px; padding: 2px; list-style: decimal inside; text-align: left;}
ul { margin: 2px; padding: 2px; list-style: square inside; text-align: left;}
li { margin-left: 2px; color: #2F5376}
----
Change these last 3 lines and phpWiki will display # numbered lists correctly.