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Have just found an alternative method which may work better:
I Moved the slider code into a separate file then enclosed it like this in the main theme.html file so it only appears on the home page
<!-- Slider -->
<{if $smarty.server.PHP_SELF=='/index.php'}>
<{include file="$theme_name/theme_slider.html"}>
<{/if}>
<!-- END Slider -->
I then removed this line from the <head> section of theme.html
<script src="<{xoImgUrl js/jquery.jcarousel.js}>" type="text/javascript"></script>
and added it to the end of the slider file (after the last </div>
</div>
<script src="<{xoImgUrl js/jquery.jcarousel.js}>" type="text/javascript"></script>
This should allow any module to work (I hope!!!)
Alan
