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As i have mention many times the problem occured before the mods were put in place.
The site is a student run web site for the students, it came out that the administation was doing something and the student body wasnt happy so they made a web site. But then it got taken on that this site would replace the schools internal site.
The share server, is my server, I run a small hosting company and I run it on my server. There has been no security problems on this server.
My programming team will be finishing thier documentation soon, right now they are working their butts off to get the 2.0.7 update ready.
Basically from what i understand from my programmers the only major change they made to the core, was editing and adding some class files for our registration process.